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| Wolverine Villains | ||
| Apocalypse | Arcade | Ba'al |
| Blackheart | Bloodscream | Bushwacker |
| Crusader | Cyber | Cylla |
| Daken | Lady Deathstrike | Magneto |
| Mastermind II | Mister X | Mojo |
| Nitro | Nuke | Omega Red |
| Razor-Fist II | Roughouse | Sabretooth |
| Shredder | S.H.I.V.A. | Silver Samurai |
| Tiger Shark | Titannus | Viper II |
| Wendigo I | Wendigo II | Wendigo III |
| Winter Soldier | Zaran | |
| Contingency | ||
| Rapture II (Leader) | ||
| Dark Riders | ||
| Genesis | ||
| The Hand | ||
| The Hand | Matsu'o Tsurayaba | |
| HYDRA | ||
| Baron Wolfgang Von Strucker (Leader) | HYDRA | Madame Hydra I |
| Silver Samurai | ||
| Reavers | ||
| Bonebreaker | Cylla | Donald Pierce |
| Lady Deathstrike | Prettyboy | Skullbuster I |
Savage Land Mutates |
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| Amphibius | Barbarus | Brainchild |
| Sauron | Whiteout | Worm |
| Zaladane | ||