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| Wolverine Villains | ||
| Apocalypse | Arcade | Ba'al |
| Blackheart | Bloodscream | Bushwacker |
| Chimera | Crusader | Cyber |
| Cylla | Daken | Elsie-Dee |
| Kimora | Lady Deathstrike | Lord Dark Wind |
| Magneto | Mastermind II | Meltdown II |
| Mister X | Mojo | Nitro |
| Nuke | Omega Red | Phaedra |
| Razor-Fist II | Roughouse | Sabretooth |
| Shredder | S.H.I.V.A. | Silver Samurai |
| Spore | Tiger Shark | Titannus |
| Uncegila | Viper II | Wendigo I |
| Wendigo II | Wendigo III | Winter Soldier |
| Zaran | ||
| Contingency | ||
| Rapture II (Leader) | ||
| Dark Riders | ||
| Dirtnap | Genesis | |
| The Hand | ||
| Gorgon II | The Hand | Matsu'o Tsurayaba |
| Phaedra | ||
| HYDRA | ||
| Baron Wolfgang Von Strucker (Leader) | Gorgon II | HYDRA |
| Madame Hydra I | Silver Samurai | |
| Reavers | ||
| Bonebreaker | Cylla | Donald Pierce |
| Lady Deathstrike | Prettyboy | Skullbuster I |
Savage Land Mutates |
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| Amphibius | Barbarus | Brainchild |
| Sauron | Whiteout | Worm |
| Zaladane | ||